The first reference is the chime that is played when solving a puzzle in the Wish Seed Level. After completing a puzzle the chime that plays is similar to the puzzle solving chime from the Zelda series.
The second, and most glaring reference is to Navi of Ocarina of Time. The Fairy Orbitars idol description states, “Tired of pixies asking you to listen?” This is of course referencing the famous and vastly annoying “hey, look, listen” alerts of Navi.
Have you spotted any other Zelda references in Kid Icarus? If so let us know in the comments.
